• General Information About This DataBase
    Version 2.1
    Create time 2015-01-01
    Last update time 2015-01-01
  • SNP Total Statistics
    Total SNPs 62,888,582
    Total Reference SNPs 15,357,261
    Total Species Number 48
  • SNP Statistics By Individual
    Build Id Accession Group Membership Country Total SNP
    s1Ai4Improved varietiesChina breeding program1,160,161
    s2BTx642Improved varietiesEthiopia1,524,769
    s3B923296Improved varietiesAustralia breeding program652,758
    s4GreenleafWild and weedyUSA breeding program1,522,107
    s5Early HegariLandracesSudan910,090
    s6ICSV745Improved varietiesIndia breeding program906,800
    s7IS3614-2LandracesNigeria1,313,068
    s8IS8525LandracesEthiopia941,482
    s9IS9710LandracesSudan961,866
    s10Karper 669Improved varietiesUSA breeding program1,121,780
    s11KS115Improved varietiesUSA breeding program937,449
    s12LR9198Improved varietiesChina breeding program1,253,170
    s13M35-1LandracesIndia breeding program799,673
    s14MaciaImproved varietiesMozambique776,904
    s15Malisor 84-7Improved varietiesMali347,707
    s16PI525695Improved varietiesMali1,964,025
    s17QL12Improved varietiesAustralia breeding program1,037,252
    s18R931945-2-2Improved varietiesAustralia breeding program1,240,958
    s19RioImproved varietiesUSA breeding program824,373
    s20RTx7000Improved varietiesUSA breeding program1,125,422
    s21S. bicolor subsp. drummondii (PI330272)Wild and weedyEthiopia1,501,312
    s22SC103-14ELandracesSouth Africa800,708
    s23SC108CLandracesEthiopia738,736
    s24SC170-6-8LandracesEthiopia834,928
    s25SC23LandracesEthiopia1,362,098
    s26SC237-14ELandracesSudan865,874
    s27SC326-6LandracesUSA/Ethiopia862,389
    s28SC35CLandracesEthiopia1,228,814
    s29SC56-14ELandracesSudan963,728
    s30SC62CLandracesKenya996,081
    s31PI586430Improved varietiesSierra Leone1,938,008
    s32B963676Improved varietiesAustralia breeding program646,947
    s33S. bicolor subsp. verticilliflorum (PI300119)Wild and weedySouth Africa2,995,879
    s34S. bicolor (PI226096)Wild and weedyKenya1,956,801
    s35PI585749LandracesMali1,446,371
    s36S. bicolor subsp. verticilliflorum (AusTRCF 317961)Wild and weedyAustralia2,003,360
    s37S. propinquum 369-1S. propinquum05,200,279
    s38S. propinquum 369-2S. propinquum04,993,948
    s39IBC/E-38432LandracesEthiopia1,715,354
    s40Yik. solate (IBC/E-339)LandracesEthiopia1,118,066
    s41Kilo (IBC/E-382)Wild and weedyEthiopia1,267,760
    s42Cherekit (IBC/E-460)LandracesEthiopia932,505
    s43Zengada (IBC/E-308)Wild and weedyEthiopia1,581,684
    s44PI563516Improved varietiesMali1,014,530
    s45Ji_2731Improved varietiesChina breeding program538,989
    s46KellerImproved varietiesUSA breeding program335,625
    s47E-TianImproved varietiesChina breeding program434,744
    s48SS79LandracesEthiopia1,291,250
  • SNP Annotation Statistics
Build Id Species Name Group membership Missense Variant Synonymous Variant Stop Gained Stop Lost Stop Retained Variant Start Lost Initiator Codon Variant Splice Acceptor Variant Splice Donor Variant Splice Region Variant Intron Variant 5 Prime UTR Premature Start Codon Gain Variant 5 Prime UTR Variant 3 Prime UTR Variant Intergenic Variant All
s1 Ai4 Improved varieties 22722 22193 291 78 24 45 12 99 90 2409 112978 1416 7757 26553 963494 1160161
s2 Sorghum bicolour B35 resequencing Landraces 27541 26021 363 107 38 75 23 99 93 2486 132322 2114 12862 32749 1287876 1524769
s3 B923296 Improved varieties 13219 12591 199 53 19 26 9 72 53 1395 66567 770 4312 16395 537078 652758
s4 Greenleaf Wild and weedy 29247 28130 411 122 34 60 16 116 110 3038 145993 1871 10468 34204 1268287 1522107
s5 Early Hegari Landraces 20375 19267 282 81 18 35 12 69 69 1960 90114 1281 6893 20719 748915 910090
s6 ICSV745 Improved varieties 17476 15943 246 64 21 45 9 74 69 1643 81888 1084 6166 19300 762772 906800
s7 IS3614-2 Landraces 22931 21749 358 95 37 48 13 112 83 2586 123657 1421 8066 29188 1102724 1313068
s8 IS8525 Landraces 19527 18210 261 69 24 46 17 87 64 1858 92487 1353 7926 22188 777365 941482
s9 IS9710 Landraces 20584 20071 301 85 21 38 10 78 73 2161 102930 1265 6937 24013 783299 961866
s10 Karper 669 Improved varieties 22061 20738 301 93 24 52 11 94 63 2209 106347 1362 7839 25193 935393 1121780
s11 KS115 Improved varieties 17830 16454 270 77 33 35 12 89 71 2111 102892 900 4773 24350 767552 937449
s12 LR9198 Improved varieties 24483 23565 331 95 27 47 10 107 103 2433 121486 1735 9778 29609 1039361 1253170
s13 M35-1 Landraces 15727 15239 246 68 21 39 5 74 66 1646 81167 1048 5629 19067 659631 799673
s14 Macia Improved varieties 16103 15199 239 62 26 38 5 60 51 1661 84057 996 5698 19937 632772 776904
s15 Malisor 84-7 Improved varieties 7834 7175 130 39 10 16 1 32 28 742 36036 380 2079 8261 284944 347707
s16 PI525695 Landraces 36202 35569 524 135 46 73 15 162 136 4082 197292 2318 12730 46286 1628455 1964025
s17 QL12 Improved varieties 20297 18933 313 79 25 45 10 98 64 2097 101401 1321 7376 24245 860948 1037252
s18 R931945-2-2 Improved varieties 22904 21989 331 81 29 74 15 110 88 2042 109678 1703 10365 26306 1045243 1240958
s19 Rio Improved varieties 19751 18890 259 72 21 47 16 75 65 1899 92526 1273 7410 21916 660153 824373
s20 SAMN01822416 Improved varieties 21075 19846 284 93 32 47 15 97 78 1948 102492 1605 9873 24795 943142 1125422
s21 S. bicolor subsp. drummondii (PI330272) Wild and weedy 30448 29048 458 123 49 56 11 148 100 3054 147465 1865 10899 35194 1242394 1501312
s22 SC103-14E Landraces 17216 15899 244 72 20 39 8 75 51 1763 82356 1014 5589 19275 657087 800708
s23 SC108C Landraces 16647 15926 230 60 20 42 9 68 51 1604 78205 1054 5969 18758 600093 738736
s24 SC170-6-8 Landraces 16224 15499 245 69 27 44 5 58 55 1631 77492 1065 6107 18180 698227 834928
s25 SC23 Landraces 24986 23680 384 107 31 55 14 108 87 2468 123135 1587 9130 29949 1146377 1362098
s26 SC237-14E Landraces 18947 18174 282 79 22 50 6 72 57 1807 87805 1242 7299 21154 708878 865874
s27 SC326-6 Landraces 18410 17529 266 82 26 34 10 96 62 1831 91952 1220 6869 21739 702263 862389
s28 SC35C Landraces 23108 22143 317 89 32 48 16 94 84 2389 115689 1402 7766 27565 1028072 1228814
s29 SC56-14E Landraces 21451 19783 328 78 24 40 10 80 58 1946 98457 1433 7831 23541 788668 963728
s30 SC62C Landraces 23186 21516 295 99 28 38 10 94 71 2250 108872 1455 8304 26629 803234 996081
s31 PI586430 Landraces 38894 38431 562 144 47 82 15 175 138 4133 198477 2525 13766 46271 1594348 1938008
s32 B963676 Improved varieties 14277 14007 192 62 18 30 5 64 57 1510 71404 962 5095 17587 521677 646947
s33 S. bicolor subsp. verticilliflorum (PI300119) Wild and weedy 56213 56617 786 204 90 132 29 224 211 5756 290919 4441 26648 71315 2482294 2995879
s34 S. bicolor (PI226096) Wild and weedy 35250 33730 495 145 48 76 16 148 148 3503 179268 2767 16255 43508 1641444 1956801
s35 PI585749 Landraces 27449 25917 388 109 43 65 17 130 95 2689 133531 1930 11321 32590 1210097 1446371
s36 S. bicolor subsp. verticilliflorum (AusTRCF 317961) Wild and weedy 38953 39283 521 145 53 80 16 185 163 4814 226288 2278 12596 52566 1625419 2003360
s37 S. propinquum 369-1 Sorghum propinquum 124517 141591 1519 378 236 249 42 481 407 14288 713492 9859 58105 163430 3971685 5200279
s38 S. propinquum 369-2 Sorghum propinquum 118631 135432 1437 359 240 241 41 465 405 14181 704812 9169 53315 160696 3794524 4993948
s39 IBC/E-38432 Landraces 30353 29061 442 113 45 70 14 121 108 3342 167795 1965 11247 40485 1430193 1715354
s40 Yik. solate Landraces 17059 15380 249 67 28 25 8 90 79 2328 116030 990 5181 27540 933012 1118066
s41 Kilo (IBC/E-382) Wild and weedy 21473 19909 294 73 32 35 5 106 85 2803 137344 1058 5627 31449 1047467 1267760
s42 Cherekit (IBC/E-460) Landraces 19765 18989 291 68 18 42 12 72 66 2011 96419 1283 7179 22799 763491 932505
s43 Zengada (IBC/E-308) Wild and weedy 28624 27247 413 111 45 59 13 147 95 3162 155882 1864 10824 37720 1315478 1581684
s44 PI563516 Improved varieties 20999 20101 298 86 27 53 13 94 62 2032 100645 1427 8632 24679 835382 1014530
s45 Ji_2731 Improved varieties 24847 25652 265 76 23 52 13 62 74 1474 60269 1666 10246 19250 395020 538989
s46 Keller Improved varieties 13143 12560 212 48 12 27 7 45 36 1302 50617 750 4096 14148 238622 335625
s47 E-Tian Improved varieties 19683 20023 228 65 25 41 14 66 57 1085 45605 1430 8666 14334 323422 434744
s48 SS79 Landraces 34079 32586 419 116 37 78 21 130 102 2384 122623 2602 16348 30973 1048752 1291250