References

1. References on general information about sorghum

2. References on sorghum genome

3. References on sorghum QTLs

4. References on sorghum genes

  • References on Sorghum Genome

    We collected some papers on sorghum genome sequencing and genomics study for your reference.

    You may find more sorghum genome papers at PubMed.


    • Shen X, Liu ZQ, Mocoeur A, Xia Y, Jing HC.
      PAV markers in Sorghum bicolour: genome pattern, affected genes and pathways, and genetic linkage map construction.
      Theor Appl Genet. 2015 Jan 30.
      Abstract
    • Rhodes DH, Hoffmann L Jr, Rooney WL, Ramu P, Morris GP, Kresovich S.
      Genome-wide association study of grain polyphenol concentrations in global sorghum [Sorghum bicolor (L.) Moench] germplasm.
      J Agric Food Chem. 2014 Nov 12;62(45):10916-27.
      Abstract
    • Panahi B, Abbaszadeh B, Taghizadeghan M, Ebrahimie E.
      Genome-wide survey of Alternative Splicing in Sorghum Bicolor.
      Physiol Mol Biol Plants. 2014 Jul;20(3):323-9.
      Abstract
    • Zhang LM, Luo H, Liu ZQ, Zhao Y, Luo JC, Hao DY, Jing HC.
      Genome-wide patterns of large-size presence/absence variants in sorghum.
      J Integr Plant Biol. 2014 Jan;56(1):24-37.
      Abstract
    • Bekele WA, Wieckhorst S, Friedt W, Snowdon RJ.
      High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array.
      Plant Biotechnol J. 2013 Dec;11(9):1112-25.
      Abstract
    • Morishige DT, Klein PE, Hilley JL, Sahraeian SM, Sharma A, Mullet JE.
      Digital genotyping of sorghum - a diverse plant species with a large repeat-rich genome.
      BMC Genomics. 2013 Jul 5;14:448.
      Abstract
    • Morris GP, Ramu P, Deshpande SP, Hash CT, Shah T, Upadhyaya HD, Riera-Lizarazu O, Brown PJ, Acharya CB, Mitchell SE, Harriman J, Glaubitz JC, Buckler ES, Kresovich S.
      Population genomic and genome-wide association studies of agroclimatic traits in sorghum.
      Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):453-8.
      Abstract
    • Mace ES, Tai S, Gilding EK, Li Y, Prentis PJ, Bian L, Campbell BC, Hu W, Innes DJ, Han X, Cruickshank A, Dai C, Frère C, Zhang H, Hunt CH, Wang X, Shatte T, Wang M, Su Z, Li J, Lin X, Godwin ID, Jordan DR, Wang J.
      Whole-genome sequencing reveals untapped genetic potential in Africa's indigenous cereal crop sorghum.
      Nat Commun. 2013;4:2320.
      Abstract
    • Zheng LY, Guo XS, He B, Sun LJ, Peng Y, Dong SS, Liu TF, Jiang S, Ramachandran S, Liu CM, Jing HC.
      Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor).
      Genome Biol. 2011 Nov 21;12(11):R114.
      Abstract
    • Wang ML, Zhu C, Barkley NA, Chen Z, Erpelding JE, Murray SC, Tuinstra MR, Tesso T, Pederson GA, Yu J.
      Genetic diversity and population structure analysis of accessions in the US historic sweet sorghum collection.
      Theor Appl Genet. 2009 Dec;120(1):13-23.
      Abstract
    • Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, Freeling M, Gingle AR, Hash CT, Keller B, Klein P, Kresovich S, McCann MC, Ming R, Peterson DG, Mehboob-ur-Rahman, Ware D, Westhoff P, Mayer KF, Messing J, Rokhsar DS.
      The Sorghum bicolor genome and the diversification of grasses.
      Nature. 2009 Jan 29;457(7229):551-6.
      Abstract
    • Sasaki T, Antonio BA.
      Plant genomics: Sorghum in sequence.
      Nature. 2009 Jan 29;457(7229):547-8.
      Abstract
    • Paterson AH.
      Genomics of sorghum.
      Int J Plant Genomics. 2008;2008:362451.
      Abstract
    • Sorghum Genomics Planning Workshop participants.
      Toward sequencing the sorghum genome. A U.S. National Science Foundation-sponsored workshop report.
      Plant Physiol. 2005 Aug;138(4):1898-902.
      Abstract
    • Price HJ, Dillon SL, Hodnett G, Rooney WL, Ross L, Johnston JS.
      Genome evolution in the genus Sorghum (Poaceae).
      Ann Bot. 2005 Jan;95(1):219-27.
      Abstract
    • Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA. Sorghum genome sequencing by methylation filtration.
      PLoS Biol. 2005 Jan;3(1):e13.
      Abstract
    • Swigonová Z, Lai J, Ma J, Ramakrishna W, Llaca V, Bennetzen JL, Messing J.
      Close split of sorghum and maize genome progenitors.
      Genome Res. 2004 Oct;14(10A):1916-23.
      Abstract
    • Bowers JE, Abbey C, Anderson S, Chang C, Draye X, Hoppe AH, Jessup R, Lemke C, Lennington J, Li Z, Lin YR, Liu SC, Luo L, Marler BS, Ming R, Mitchell SE, Qiang D, Reischmann K, Schulze SR, Skinner DN, Wang YW, Kresovich S, Schertz KF, Paterson AH.
      A high-density genetic recombination map of sequence-tagged sites for sorghum, as a framework for comparative structural and evolutionary genomics of tropical grains and grasses.
      Genetics. 2003 Sep;165(1):367-86.
      Abstract
    • Mullet JE, Klein RR, Klein PE.
      Sorghum bicolor - an important species for comparative grass genomics and a source of beneficial genes for agriculture.
      Curr Opin Plant Biol. 2002 Apr;5(2):118-21.
      Abstract
    • Draye X, Lin YR, Qian XY, Bowers JE, Burow GB, Morrell PL, Peterson DG, Presting GG, Ren SX, Wing RA, Paterson AH.
      Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation.
      Plant Physiol. 2001 Mar;125(3):1325-41.
      Abstract
    • Klein PE, Klein RR, Cartinhour SW, Ulanch PE, Dong J, Obert JA, Morishige DT, Schlueter SD, Childs KL, Ale M, Mullet JE.
      A high-throughput AFLP-based method for constructing integrated genetic and Physical maps: progress toward a sorghum genome map.
      Genome Res. 2000 Jun;10(6):789-807.
      Abstract
    • Whitkus R, Doebley J, Lee M.
      Comparative genome mapping of Sorghum and maize.
      Genetics. 1992 Dec;132(4):1119-30.
      Abstract