SNP Detail For snp_sb008008566426    [See in GBrowse]
1.General Information
SNP ID: snp_sb008008566426
Organism: Sorghum
Individual: IS8525
Create time: 2015-01-01
Last update: 2015-01-01
2.Allele Information
Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: R
5'flank: ATTCAAGAGCCATTTTTTGAATTACCCATA
3'flank: TGAATGCACCAACAGTGCCCGACACTGTGA
3.Reference Map information
Chrom Position Reference IS8525
Chr1 57744 G R
4.Gene information
Gene model(s)
Gene ID Position in Gene Strands Gene Allele Location
Sobic.001G000600 4315 - R 5' UTR Premature Start Codon Gain Variant
Transcript Protein
SNP to transcript Accession Position in Transcript Allele change Accession Position in Protein Residue change
NA NA NA NA NA NA NA
5.SNPs of other individuals in this position
SNP_ID Individual Genotype 5' Near Seq 30 bp 3' Near Seq 30 bp Create time Last update time
snp_sb003002890528 B923296 R ATTCAAGAGCCATTTTTTGAATTACCCATA TGAATGCACCAACAGTGCCCGACACTGTGA 2015-01-01 2015-01-01
snp_sb020021629030 RTx7000 R ATTCAAGAGCCATTTTTTGAATTACCCATA TGAATGCACCAACAGTGCCCGACACTGTGA 2015-01-01 2015-01-01
6.Fasta Information
TGTATGCACC CACTCCGATG ATTCAAGAGC CATTTTTTGA ATTACCCATA
R
TGAATGCACC AACAGTGCCC GACACTGTGA TGCCAGAAAC AATTGCTCAC