SNP Detail For
snp_sb045064281254
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1.General Information
| SNP ID: | snp_sb045064281254 |
|---|---|
| Organism: | Sorghum |
| Individual: | Ji_2731 |
| Create time: | 2015-01-01 |
| Last update: | 2015-01-01 |
2.Allele Information
| Platform: | SOLEXA |
|---|---|
| Method: | sequence |
| SNP Class: | SNP |
| Genotype: | T |
| 5'flank: | ACTGCATGTACCAAGGTTTGTTCATCCTTA |
| 3'flank: | ATTCACACACACATCTTAATGCAGATTCGC |
3.Reference Map information
| Chrom | Position | Reference | Ji_2731 |
|---|---|---|---|
| Chr6 | 40267184 | G | T |
4.Gene information
| Gene model(s) | ||||||
|---|---|---|---|---|---|---|
| Gene ID | Position in Gene | Strands | Gene Allele | Location | ||
| Sobic.006G057900 | 229 | + | T | 5' UTR Premature Start Codon Gain Variant | ||
| Transcript | Protein | |||||
| SNP to transcript | Accession | Position in Transcript | Allele change | Accession | Position in Protein | Residue change |
| NA | NA | NA | NA | NA | NA | NA |
5.SNPs of other individuals in this position
| SNP_ID | Individual | Genotype | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Create time | Last update time |
|---|---|---|---|---|---|---|
| snp_sb035042706671 | PI585749 | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb039056884964 | IBC/E-38432 | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb034040833285 | S. bicolor (PI226096) | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb002002140235 | BTx642 | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb023025721571 | SC108C | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb032036226084 | B963676 | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb003003259356 | B923296 | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb025027839557 | SC23 | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb012013502817 | LR9198 | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb001000687322 | Ai4 | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb042060721261 | Cherekit (IBC/E-460) | C | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb026028943468 | SC237-14E | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb028031046287 | SC35C | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb040058325998 | Yik. solate (IBC/E-339) | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb014015491892 | Macia | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb004004545564 | Greenleaf | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb011012379013 | KS115 | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb029032181618 | SC56-14E | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb005005709100 | Early Hegari | C | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb047065127994 | E-Tian | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb022024824327 | SC103-14E | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
| snp_sb043062139210 | Zengada (IBC/E-308) | T | ACTGCATGTACCAAGGTTTGTTCATCCTTA | ATTCACACACACATCTTAATGCAGATTCGC | 2015-01-01 | 2015-01-01 |
6.Fasta Information
| CGTCAGTGCC | CTTCTTCGTC | ACTGCATGTA | CCAAGGTTTG | TTCATCCTTA |
| T | ||||
| ATTCACACAC | ACATCTTAAT | GCAGATTCGC | TTTGAGATGT | GTGCTACACT |
