SNP Detail For
snp_sb045063965161
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1.General Information
| SNP ID: | snp_sb045063965161 |
|---|---|
| Organism: | Sorghum |
| Individual: | Ji_2731 |
| Create time: | 2015-01-01 |
| Last update: | 2015-01-01 |
2.Allele Information
| Platform: | SOLEXA |
|---|---|
| Method: | sequence |
| SNP Class: | SNP |
| Genotype: | G |
| 5'flank: | CCATCTCTCCAGGTGCACCTCTGCTTTCTT |
| 3'flank: | AATAGTTACTGTTGCGCCACTGTGTCTACG |
3.Reference Map information
| Chrom | Position | Reference | Ji_2731 |
|---|---|---|---|
| Chr1 | 13355486 | A | G |
4.Gene information
| Gene model(s) | ||||||
|---|---|---|---|---|---|---|
| Gene ID | Position in Gene | Strands | Gene Allele | Location | ||
| Sobic.001G162300 | 931 | - | G | Stop Lost | ||
| Transcript | Protein | |||||
| SNP to transcript | Accession | Position in Transcript | Allele change | Accession | Position in Protein | Residue change |
| - |
Sobic.001G162300.2
 |
931 | Taa => Caa |
Sobic.001G162300.2
|
306 | * => Gln |
| - |
Sobic.001G162300.1
|
931 | Taa => Caa |
Sobic.001G162300.1
|
431 | * => Gln |
5.SNPs of other individuals in this position
| SNP_ID | Individual | Genotype | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Create time | Last update time |
|---|---|---|---|---|---|---|
| snp_sb038050759751 | S. propinquum 369-2 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb002001253905 | BTx642 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb035041779646 | PI585749 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb005005220106 | Early Hegari | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb017018292241 | QL12 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb026028458164 | SC237-14E | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb029031639019 | SC56-14E | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb044062859382 | PI563516 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb007007186784 | IS3614-2 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb011011821561 | KS115 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb046064519317 | Keller | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb016016250297 | PI525695 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb036043336283 | S. bicolor subsp.verticilliflorum (AusTRCF 317961) | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb022024431355 | SC103-14E | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb023025295506 | SC108C | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb037045565603 | S. propinquum 369-1 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb012012816410 | LR9198 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb025027001286 | SC23 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb031033773848 | PI586430 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb014015015033 | Macia | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb021022846784 | S. bicolor subsp. drummondii (PI330272) | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb039055828751 | IBC/E-38432 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb034039702976 | S. bicolor (PI226096) | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb043061194232 | Zengada (IBC/E-308) | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb013014134073 | M35-1 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb028030330913 | SC35C | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb042060190823 | Cherekit (IBC/E-460) | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb020021631608 | RTx7000 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb018019411035 | R931945-2-2 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb024026088502 | SC170-6-8 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb033036575319 | S. bicolor subsp. verticilliflorum (PI300119) | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
| snp_sb009009602028 | IS9710 | G | CCATCTCTCCAGGTGCACCTCTGCTTTCTT | AATAGTTACTGTTGCGCCACTGTGTCTACG | 2015-01-01 | 2015-01-01 |
6.Fasta Information
| AGTCCCAATT | ATCTCCACAG | CCATCTCTCC | AGGTGCACCT | CTGCTTTCTT |
| G | ||||
| AATAGTTACT | GTTGCGCCAC | TGTGTCTACG | GATATAACTG | ATACTAGCAC |
